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CoD: Inferring Immune-Cell Quantities Related to Disease States

Using CoD on the website

A version of CoD application is freely available on different browsers including FireFox version 22 (22.0 and higher),
Chrome version 28 (28.0.1500.72 and higher), Safari version 6 (6.0.2 and higher) and Explorer version 10 (10.0.9200 and higher).

Users interested in commercial applications should contact Irit Gat-Viks.

CoD manual

The CoD manual is available here. The manual provides instructions on how to apply the CoD analysis.

Example files

CoD takes the following inputs:

  1. An 'expression data file', containing the gene expression data where each sample is labeled by one of two classes.
  2. Number of trees built during classification by the Random Forest algorithm.
  3. Number of permutations used for the significance analysis.

 

All those inputs should be uploaded by the user.
Additional explanations about the input file format and pre-processing are in the manual file.

Example files are available here.

The people behind CoD

CoD was developed in:
Dr. Irit Gat-Viks's System Genetics and Immuno-Genomics Laboratory at the Cell Research and Immunology Department,
Faculty of Life Sciences, Tel Aviv University, Israel;

References

[1] Amit Frishberg, Yael Steuerman, Irit Gat-Viks. CoD: Inferring Immune-Cell Quantities Related to Disease States. Submitted 

Feedback

For any questions, bugs and suggestions please contact: Amit Frishberg.

Copyright information

Copyrights Tel-Aviv University, Israel (2015).

 

The name of contributors may be used to endorse or promote products derived from this software without specific prior written permission.

This software is provided "AS IS," without a warranty of any kind. ALL EXPRESS OR IMPLIED CONDITIONS,
REPRESENTATIONS AND WARRANTIES, INCLUDING ANY IMPLIED WARRANTY OF MERCHANTABILITY, FITNESS
FOR A PARTICULAR PURPOSE OR NON-INFRINGEMENT, ARE HEREBY EXCLUDED.

 

 

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